ReadBED: Read BED-formatted file.
In mevers/RNAModR: Functional Analysis of RNA Modifications

Description Usage Arguments Details Value Author(s) Examples

Read BED-formatted file. See 'Details'.

1	ReadBED(file, collapseRange = TRUE)

`file`	A character string; specifies the input BED file.
`collapseRange`	A logical scalar; should `TRUE` loci spanning more than one nucleotide be collapsed to a single nucleotide locus corresponding to the midpoint of the range; default is `TRUE`.

The function opens and reads in a BED6-formatted file, and stores the annotation features in a GRanges object. Chromosome names must follow either UCSC (chr1, ..., chrM, chrX) or Ensembl naming conventions (1, ..., MT, X).

A GRanges object. See 'Details'.

Maurits Evers, maurits.evers@anu.edu.au

bedFile <- system.file("extdata",
                       "miCLIP_m6A_Linder2015_hg38.bed",
                       package = "RNAModR")
sites <- ReadBED(bedFile)