GetDistNearestStartStop: Get distance of sites to the nearest start/stop codon.
In mevers/RNAModR: Functional Analysis of RNA Modifications
Description
Usage
Arguments
Details
Value
Author(s)
Description
Get distance of sites from a txLoc to the nearest start/stop codon.
Usage
1
GetDistNearestStartStop(txLoc)
Arguments
txLoc
A txLoc object.
Details
The function converts transcript region coordinates from a txLoc to
transcript coordinates, and returns distances of sites to the nearest
start/stop codon. A transcript is defined as the concatenation of
the following transcript regions: 5'UTR, CDS, 3'UTR. The return object is
a list of distances of sites from txLoc to the nearest start
and stop codons.
Value
A list. See 'Details'.
Author(s)
Maurits Evers, maurits.evers@anu.edu.au
mevers/RNAModR documentation built on Nov. 17, 2019, 9:11 a.m.
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Description Usage Arguments Details Value Author(s)
Description
Get distance of sites from a txLoc to the nearest start/stop codon.
Usage
1 | GetDistNearestStartStop(txLoc)
|
Arguments
txLoc |
A |
Details
The function converts transcript region coordinates from a txLoc to
transcript coordinates, and returns distances of sites to the nearest
start/stop codon. A transcript is defined as the concatenation of
the following transcript regions: 5'UTR, CDS, 3'UTR. The return object is
a list of distances of sites from txLoc to the nearest start
and stop codons.
Value
A list. See 'Details'.
Author(s)
Maurits Evers, maurits.evers@anu.edu.au
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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