PlotSectionEnrichment: Perform enrichment analysis of sites per transcript region...
In mevers/RNAModR: Functional Analysis of RNA Modifications

Description Usage Arguments Value Author(s) Examples

Perform enrichment analysis of the number of positive sites in txLoc.pos relative to the number of null sites in txLoc.neg per transript region and plot results. Enrichment/depletion is evaluated using (multiple) Fisher's exact test(s). Multiple hypothesis testing correction is applied following the method of Bejamini and Hochberg.

1	PlotSectionEnrichment(txLoc.pos, txLoc.neg, xAxisLblFmt = 2)

`txLoc.pos`	A `txLoc` object. These correspond to the positive sites.
`txLoc.neg`	A `txLoc` object. These correspond to the negative (null) sites.
`xAxisLblFmt`	Plot extended axis labels. Default is 2. See ??? for details.

NULL.

Maurits Evers, maurits.evers@anu.edu.au

## Not run: 
bedFile <- system.file("extdata",
                       "miCLIP_m6A_Linder2015_hg38.bed",
                       package = "RNAModR")
sites <- ReadBED(bedFile)
pos <- SmartMap(sites, id = "m6A", refGenome = "hg38")
neg <- GenerateNull(pos, method = "nuclAbundance")
PlotSectionEnrichment(
    FilterTxLoc(pos, c("5'UTR", "CDS", "3'UTR")),
    FilterTxLoc(neg, c("5'UTR", "CDS", "3'UTR")))

## End(Not run)