PlotSpatialRatio: Plot ratio of two spatial distributions.

In mevers/RNAModR: Functional Analysis of RNA Modifications

Description

Plot ratio of two spatial distributions.

Usage

PlotSpatialRatio(locPos, locNeg, filter = NULL, binWidth = 20,
  posMax = 1000)

Arguments

locPos	A txLoc object. These should be the positive control sites.
locNeg	A txLoc object. These should be the negative control sites.
filter	Only plot loci in transcript regions specified in filter.
binWidth	Spatial bin width. Overrides nbreaks if not NULL.
posMax	If absolute == TRUE, show spatial distribution within a window given by posMax from the 5'/3' position of the transcript feature. Default is 1000 nt.

Author(s)

Maurits Evers, [e-mail]

Examples

## Not run: 
bedFile <- system.file("extdata",
                       "miCLIP_m6A_Linder2015_hg38.bed",
                       package = "RNAModR");
sites <- ReadBED(bedFile);
posSites <- SmartMap(sites, id = "m6A", refGenome = "hg38");
negSites <- GenerateNull(posSites, method = "permutation");
PlotSpatialRatio(posSites, negSites, c("3'UTR", "CDS", "5'UTR"));

## End(Not run)

mevers/RNAModR documentation built on Nov. 17, 2019, 9:11 a.m.