GetSplicingSites: Get splicing sites from reference transcriptome

In mevers/RNAModR: Functional Analysis of RNA Modifications

Description

Get splicing sites from transcriptome. See 'Details'.

Usage

GetSplicingSites(refGenome = "hg38", filter = c("CDS", "5'UTR"))

Arguments

refGenome	A character string; specifies a specific reference genome assembly version based on which the matching transcriptome is loaded; default is "hg38".
filter	A character vector; only consider transcript sections specified in filter; default is c("CDS", "5'UTR").

Details

The function extracts splicing sites from a reference trancriptome specified by refGenome, and returns a GRanges object. Splicing sites are identified as either donor (splicing site at the 5' end of the intron) or acceptor (splicing site at the 3' end of the intron) site.

Value

A GRanges object. See 'Details'.

Author(s)

Maurits Evers, [e-mail]

mevers/RNAModR documentation built on Nov. 17, 2019, 9:11 a.m.