PlotEnrichment.Generic: Generic function to perform enrichment analysis and plot...
In mevers/RNAModR: Functional Analysis of RNA Modifications

Description Usage Arguments Value Author(s)

Generic function to perform enrichment analysis and plot results. Enrichment/depletion is evaluated using (multiple) Fisher's exact test(s). Multiple hypothesis testing correction is applied following the method of Bonferroni (default, see argument padjMethod). Note: This function should not be invoked directly by the user.

1
2
3

PlotEnrichment.Generic(mat, padjMethod = "bonferroni", title = "",
  xlab = "", x.las = 1, x.cex = 1, x.padj = 1, plotType = "l",
  revXaxis = FALSE, xAxisLblFmt = 0)

`mat`	A `dataframe`; specifies the contingency table.
`padjMethod`	A `character` string; specifies the multiple hypothesis testing correction method; see `?p.adjust` for details. Default is `"bonferroni"`.
`title`	A character string; specifies plot title.
`xlab`	A character string; specifies the x-axis label.
`x.las`	An integer scalar; specifies the orientation of x-axis labels; Default is 1.
`x.cex`	A float scalar; specifies a scaling factor for x-axis labels; default is 1.
`x.padj`	A float scalar; specifies the vertical adjustment of x-axis labels; default is 1.
`plotType`	A character string; specifies the plot style; default is "l" (for line).
`revXaxis`	A logical scalar; if `TRUE`, the order of columns from `mat` is reversed; default is `FALSE`.
`xAxisLblFmt`	An integer scalar; specifies the format of the x-axis label.