API for mffrank/RNAseqToCustomFASTA
Produce Custom Protein Fasta Databases from RNAseq Data
| Global functions | |
|---|---|
| .changeHeaders | Source code |
| .getGene | Source code |
| .getIsoform | Source code |
| .getProtein | Source code |
| .instr | Source code |
| .mapToGeneLevel | Source code |
| .mergeIdenticalSeq | Source code |
| FPKMhist | Man page Source code |
| FPKMhistProteincoding | Man page Source code |
| FPKMsummaryReport | Man page Source code |
| OutputJunctions | Man page Source code |
| OutputNovelJun | Man page Source code |
| StarSJ2Range | Source code |
| VariantSummaryReport | Man page Source code |
| concatenateFastas | Man page Source code |
| convertExpressionHeaders | Source code |
| downloadAnnotations | Man page Source code |
| filterDetectedTranscripts | Man page Source code |
| filterSpacePlot | Man page Source code |
| finishFasta | Man page Source code |
| getAltSpliceProteins | Man page Source code |
| getBioMart | Man page Source code |
| getCufflinksFPKM | Man page Source code |
| getCufflinksgeneFPKM | Man page Source code |
| getCufflinksgtfFPKM | Man page Source code |
| getCufflinkstranscriptFPKM | Man page Source code |
| getProteinCoding | Man page Source code |
| getSNVandINDEL | Man page Source code |
| getStarJunctions | Man page Source code |
| getVcfs | Man page Source code |
| junctionSummaryReport | Man page Source code |
| makeDict | Man page Source code |
| plotJuncReplicateOverlap | Man page Source code |
| plotSDvsMeanExpression | Man page Source code |
| plotSNVReplicateOverlap | Man page Source code |
| saveMappingTable | Source code |
