Files in mffrank/RNAseqToCustomFASTA
Produce Custom Protein Fasta Databases from RNAseq Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/FPKMTableTools.R
R/FastaTools.R
R/JunctionTools.R
R/OutputJunctions.R
R/downloadAnnotations.R
R/getCufflinksFPKM.R
R/getStarJunctions.R
R/prepareVariants.R
R/sysdata.rda
README.md
RNAseqToCustomFASTA.Rproj
man/FPKMhist.Rd
man/FPKMhistProteincoding.Rd
man/FPKMsummaryReport.Rd
man/OutputJunctions.Rd
man/OutputNovelJun.Rd
man/VariantSummaryReport.Rd
man/concatenateFastas.Rd
man/downloadAnnotations.Rd
man/filterDetectedTranscripts.Rd
man/filterSpacePlot.Rd
man/finishFasta.Rd
man/getAltSpliceProteins.Rd
man/getBioMart.Rd
man/getCufflinksFPKM.Rd
man/getCufflinksgeneFPKM.Rd
man/getCufflinksgtfFPKM.Rd
man/getCufflinkstranscriptFPKM.Rd
man/getProteinCoding.Rd
man/getSNVandINDEL.Rd
man/getStarJunctions.Rd
man/getVcfs.Rd
man/junctionSummaryReport.Rd
man/makeDict.Rd
man/plotJuncReplicateOverlap.Rd
man/plotSDvsMeanExpression.Rd
man/plotSNVReplicateOverlap.Rd
