OutputNovelJun: Generate peptide FASTA file that contains novel junctions.
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
Description
Usage
Arguments
Value
Author(s)
View source: R/OutputJunctions.R
Description
Three-frame translation of novel junctions. And remove those could be found in normal protein sequences.
This function requires a genome built by BSgenome package.
Usage
1
OutputNovelJun(junction_type, genome, trimTry = F, proteinseq, ...)
Arguments
junction_type
a data frame which is the output of function JunctionType()
genome
a BSgenome object. (e.g. Hsapiens)
proteinseq
a data frame cotaining amino acid sequence for each protein.
...
Additional arguments.
outfile
output file name
Value
FASTA file that contains novel junction peptides.
Author(s)
Xiaojing Wang
Max Frank
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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Description Usage Arguments Value Author(s)
View source: R/OutputJunctions.R
Description
Three-frame translation of novel junctions. And remove those could be found in normal protein sequences. This function requires a genome built by BSgenome package.
Usage
1 | OutputNovelJun(junction_type, genome, trimTry = F, proteinseq, ...)
|
Arguments
junction_type |
a data frame which is the output of function JunctionType() |
genome |
a BSgenome object. (e.g. Hsapiens) |
proteinseq |
a data frame cotaining amino acid sequence for each protein. |
... |
Additional arguments. |
outfile |
output file name |
Value
FASTA file that contains novel junction peptides.
Author(s)
Xiaojing Wang
Max Frank
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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