concatenateFastas: Concatenate all fastas in a Folder.
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
Usage
1
2
concatenateFastas(path, pattern = "\\.fa", outfile = "combined.fasta",
addcRAP = TRUE, addiRT = TRUE, saveMappingTable = TRUE)
Arguments
path
Path to file containing folder
pattern
Pattern used to grep filenames (default: ".fa")
outfile
Name of the combined file.
addcRAP
logical, Should cRAP and affinity tag sequences be appended
addiRT
logical, Should iRT peptides be appended
Details
Can be used to produce a single Fasta ready for library generation.
File is saved in the path directory.
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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Usage
1 2 | concatenateFastas(path, pattern = "\\.fa", outfile = "combined.fasta",
addcRAP = TRUE, addiRT = TRUE, saveMappingTable = TRUE)
|
Arguments
path |
Path to file containing folder |
pattern |
Pattern used to grep filenames (default: ".fa") |
outfile |
Name of the combined file. |
addcRAP |
logical, Should cRAP and affinity tag sequences be appended |
addiRT |
logical, Should iRT peptides be appended |
Details
Can be used to produce a single Fasta ready for library generation. File is saved in the path directory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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