VariantSummaryReport: Generate a Variant Summary Report
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
Description
Usage
Arguments
Details
View source: R/prepareVariants.R
Description
Generate a Variant Summary Report
Usage
1
VariantSummaryReport(snv_and_indel, ids, txdb, print = TRUE)
Arguments
snv_and_indel
List object produced by getSNVandINDEL
ids
Id mapping from annotation folder
txdb
Txdb object from annotation folder
print
boolean, should the result be printed in working directory as pdf
or be returned as a list.
Details
Prints a table of the location of the variants. Caution:
Because the Varlocation function of CustomProDB is very slow, this takes a long time
to compute.
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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Description Usage Arguments Details
View source: R/prepareVariants.R
Description
Generate a Variant Summary Report
Usage
1 | VariantSummaryReport(snv_and_indel, ids, txdb, print = TRUE)
|
Arguments
snv_and_indel |
List object produced by getSNVandINDEL |
ids |
Id mapping from annotation folder |
txdb |
Txdb object from annotation folder |
print |
boolean, should the result be printed in working directory as pdf or be returned as a list. |
Details
Prints a table of the location of the variants. Caution: Because the Varlocation function of CustomProDB is very slow, this takes a long time to compute.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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