getSNVandINDEL: Annotate Variants
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
Description
Usage
Arguments
Details
View source: R/prepareVariants.R
Description
Annotate Variants
Usage
1
getSNVandINDEL(granges_variants, exon_annotation, procodingseq)
Arguments
granges_variants
GRanges object produced by getVcfs
exon_annotation
Exon annotation from annotation folder
procodingseq
Coding sequences from annotation folder
Details
Annotates the variants in a granges object produced by getVcfs
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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Description Usage Arguments Details
View source: R/prepareVariants.R
Description
Annotate Variants
Usage
1 | getSNVandINDEL(granges_variants, exon_annotation, procodingseq)
|
Arguments
granges_variants |
GRanges object produced by getVcfs |
exon_annotation |
Exon annotation from annotation folder |
procodingseq |
Coding sequences from annotation folder |
Details
Annotates the variants in a granges object produced by getVcfs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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