getStarJunctions: Read in STAR junctions
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
View source: R/getStarJunctions.R
Description
Takes STAR output files (SJ.out.tab as input and outputs a
named numeric vector (names = Transcript/gene id, value = FPKM)
Usage
1
2
3
getStarJunctions(SJout_dir, splicemax, txdb, ids, pattern = "\\.tab",
share_num = 1, extend = 100, skip = 0, covfilter_unique = 1,
covfilter_multi = 0, overhang = "max_overhang")
Arguments
SJout_dir
Path to Star output files
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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View source: R/getStarJunctions.R
Description
Takes STAR output files (SJ.out.tab as input and outputs a named numeric vector (names = Transcript/gene id, value = FPKM)
Usage
1 2 3 | getStarJunctions(SJout_dir, splicemax, txdb, ids, pattern = "\\.tab",
share_num = 1, extend = 100, skip = 0, covfilter_unique = 1,
covfilter_multi = 0, overhang = "max_overhang")
|
Arguments
SJout_dir |
Path to Star output files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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