getProteinCoding: Convert FPKM Table with transcript ids to protein ids

In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data

Description

Convert FPKM Table with transcript ids to protein ids

Usage

getProteinCoding(fpkm_table, id_table, transcript_id_name = "tx_name",
  protein_id_name = "pro_name")

Arguments

fpkm_table	Table with FPKM vaules of (multiple) samples
id_table	table with ids of both types
transcript_id_name	colname of the transcript id column in mapping table
protein_id_name	colname of the protein id column in mapping table

Details

Matches rownames of fpkm table to protein ids with a mapping table (has to be supplied)

Rows with no matching protein id are discarded

mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.