getVcfs: Read Vcf files to GRanges
In mffrank/RNAseqToCustomFASTA: Produce Custom Protein Fasta Databases from RNAseq Data
Description
Usage
Arguments
Details
View source: R/prepareVariants.R
Description
Read Vcf files to GRanges
Usage
1
Arguments
vcf_dir
Path to directory with Vcf files of all replicate samples
pattern
Pattern to grep the specific Vcf files in the directory
share_num
Number of samples that must contain the variant.
Two options, percentage format or sample number.
Details
Takes VCF output files from variant calling pipeline and combines
a GRanges object ready for fasta generation.
mffrank/RNAseqToCustomFASTA documentation built on May 22, 2019, 7:55 p.m.
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Description Usage Arguments Details
View source: R/prepareVariants.R
Description
Read Vcf files to GRanges
Usage
1 |
Arguments
vcf_dir |
Path to directory with Vcf files of all replicate samples |
pattern |
Pattern to grep the specific Vcf files in the directory |
share_num |
Number of samples that must contain the variant. Two options, percentage format or sample number. |
Details
Takes VCF output files from variant calling pipeline and combines a GRanges object ready for fasta generation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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