binSummarizedExperiment: Bin a Summarized experiment into a set of bins given by a...

In michaeldshapiro/deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Bin a Summarized experiment into a set of bins given by a GRanges object

Description

This function takes a set of bins given by a GRanges object and a RangedSummarizedExperiment and produces a new RangedSummarizedExperiment with the bins as its rowRanges

Usage

binSummarizedExperiment(bins, se, checkDisjoint = FALSE)

Arguments

bins	a GRanges object whose ranges should be disjoint
se	a RangedSummarizedExperiment
checkDisjoint	= FALSE if set to true will check that the bins are disjoint

Value

a RangedSummarizedExperiment

Examples

binnedSummarizedExperiment = binSummarizedExperiment(smallSetOfSmallBins,smallerDeltaSE)

michaeldshapiro/deltaCaptureC documentation built on April 21, 2023, 8:18 a.m.