getRunTotals: Get the runs and their values

In michaeldshapiro/deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Get the runs and their values

Description

This function finds the runs of consecutive ranges in which the sign of the data does not change. It returns a GRanges object containing the contiguous ranges and the weighted sum of data in each.

Usage

getRunTotals(se, innerRegion, colName = "delta")

Arguments

se	a SummarizedExperiment whose first assay has a column named colName. Typically this will be a one-column matrix with delta.
innerRegion	a Granges object defining the region surrounding the viewpoint to be excluded from run total calculations
colName	defaults to 'delta'

Value

a GRanges object giving the contiguous regions and their respective sums

Examples

runTotals = getRunTotals(binnedDeltaSE,viewpointRegion)

michaeldshapiro/deltaCaptureC documentation built on April 21, 2023, 8:18 a.m.