getRunAndLopsidednessStatistics: Get the distribution of run and lopsidedness statistics

In michaeldshapiro/deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Get the distribution of run and lopsidedness statistics

Description

Get the distribution of run and lopsidedness statistics

Usage

getRunAndLopsidednessStatistics(
  scrambledDeltas,
  viewpointRegion,
  colName = "delta"
)

Arguments

scrambledDeltas	a list of rebinned (i.e., to large bin size) of scrambled deltas
viewpointRegion	a GRanges object giving the region that is reserved for lopsidedness
colName	= 'delta'

Value

a Nx4 matrix giving the min, max, max(abs(min),abs(max)) and lopsidedness for the run totals in the list of scrambled deltas.

michaeldshapiro/deltaCaptureC documentation built on April 21, 2023, 8:18 a.m.