getNormalizedCountsSE: Get normalized counts
In michaeldshapiro/deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data
View source: R/deltaCaptureC.R
getNormalizedCountsSE R Documentation
Get normalized counts
Description
This function takes a SummarizedExperiment giving the the counts
for each replicate of the two treatments and computes and affixes
an assay giving the normalized version of these counts.
Usage
getNormalizedCountsSE(se)
Arguments
se
A SummarizedExperiment with an assay called counts giving
the raw counts for each replicate of the two treatments.
Value
A SummarizedExperiment including a an assay of the
normalized counts called normalizedCounts.
Examples
miniSENormalized = getNormalizedCountsSE(miniSE)
michaeldshapiro/deltaCaptureC documentation built on April 21, 2023, 8:18 a.m.
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View source: R/deltaCaptureC.R
| getNormalizedCountsSE | R Documentation |
Get normalized counts
Description
This function takes a SummarizedExperiment giving the the counts for each replicate of the two treatments and computes and affixes an assay giving the normalized version of these counts.
Usage
getNormalizedCountsSE(se)
Arguments
se |
A SummarizedExperiment with an assay called counts giving the raw counts for each replicate of the two treatments. |
Value
A SummarizedExperiment including a an assay of the normalized counts called normalizedCounts.
Examples
miniSENormalized = getNormalizedCountsSE(miniSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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