getDeltaSE: Make delta summarized experiment:
In michaeldshapiro/deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data
View source: R/deltaCaptureC.R
getDeltaSE R Documentation
Make delta summarized experiment:
Description
This function takes a SummarizedExperiment with count data and produces
a SummarizedExperiment of the delta track. There should exactly two values
for treatment, i.e., byTreatment
Usage
getDeltaSE(countsSE, byTreatment = "treatment")
Arguments
countsSE
A summarized experiment with assay counts and optionally assay normalized
counts
byTreatment
= 'treatment' Allows for specifying some other condition than 'treatment'
Value
A summarized experiment with a single assay consisting of a single column, the
delta mean normalized counts.
Examples
aSmallDeltaSE = getDeltaSE(miniSE)
michaeldshapiro/deltaCaptureC documentation built on April 21, 2023, 8:18 a.m.
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View source: R/deltaCaptureC.R
| getDeltaSE | R Documentation |
Make delta summarized experiment:
Description
This function takes a SummarizedExperiment with count data and produces a SummarizedExperiment of the delta track. There should exactly two values for treatment, i.e., byTreatment
Usage
getDeltaSE(countsSE, byTreatment = "treatment")
Arguments
countsSE |
A summarized experiment with assay counts and optionally assay normalized counts |
byTreatment |
= 'treatment' Allows for specifying some other condition than 'treatment' |
Value
A summarized experiment with a single assay consisting of a single column, the delta mean normalized counts.
Examples
aSmallDeltaSE = getDeltaSE(miniSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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