RealValET_conservativity: Calculate real-value Evolutionary Trace (ET)
In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis
Description
Usage
Arguments
Details
Value
References
Examples
Description
This function allows to calculate real-valued ET for MSA.
Usage
1
Arguments
alignment
Data loaded with read.alignment function
Details
Here, the real-valued ET is calculated using an evolutionary tree calculated for given alignment. The tree is calculated using UPGMA method. Real-valued ET score can be used as complimentary analysis of evolutionary entropy measures.
Value
A vector of real valued ET score corresponding to each MSA column
References
Mihalek, Res, Lichtarge, 2004
Examples
1
2
3
data("small_alignment")
alignment = small_alignment
weights = get_seq_weights(alignment)
michalstolarczyk/BALCONY documentation built on May 7, 2019, 6:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value References Examples
Description
This function allows to calculate real-valued ET for MSA.
Usage
1 |
Arguments
alignment |
Data loaded with |
Details
Here, the real-valued ET is calculated using an evolutionary tree calculated for given alignment. The tree is calculated using UPGMA method. Real-valued ET score can be used as complimentary analysis of evolutionary entropy measures.
Value
A vector of real valued ET score corresponding to each MSA column
References
Mihalek, Res, Lichtarge, 2004
Examples
1 2 3 | data("small_alignment")
alignment = small_alignment
weights = get_seq_weights(alignment)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.