barplotshow: Creates barplot with amino acid variation on the specified...
In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis
Description
Usage
Arguments
Value
Examples
Description
This function facilitates a visual inspection of multiple sequence alignment (MSA) position variablity.
Usage
1
barplotshow(position, AA_variation)
Arguments
position
A number of column of alignment to be visualized
AA_variation
A percentage frequency of amino acids in the alignment, calculated with calculate_AA_variation function
Value
This function produces a barchart
Examples
1
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5
data("small_alignment")
position = 100
threshold = 0.01
var_aa = calculate_AA_variation(small_alignment,threshold)
barplotshow(position, var_aa)
michalstolarczyk/BALCONY documentation built on May 7, 2019, 6:08 a.m.
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Description Usage Arguments Value Examples
Description
This function facilitates a visual inspection of multiple sequence alignment (MSA) position variablity.
Usage
1 | barplotshow(position, AA_variation)
|
Arguments
position |
A number of column of alignment to be visualized |
AA_variation |
A percentage frequency of amino acids in the alignment, calculated with |
Value
This function produces a barchart
Examples
1 2 3 4 5 | data("small_alignment")
position = 100
threshold = 0.01
var_aa = calculate_AA_variation(small_alignment,threshold)
barplotshow(position, var_aa)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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