gonnet: Gonnet substitution matrix

In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis

Description

This dataset comprises the Gonnet substitution matrix which facilitates e.g. the calculation of Landgraf conservation score

Format

An alignment object read with read.alignment function from seqinr package. A data frame with 0 observations on the following 2 variables.

AA names

Names of amino acids included in the matrix

matrix

The substitution matrix itself

Value

A character vector of length of the aligned sequence containing consesus sequence based on the input alignment

Note

Please note that this function masks the seqinr package function consensus

Source

http://imed.med.ucm.es/Tools/sias_help.html

Examples

data("gonnet")

michalstolarczyk/BALCONY documentation built on May 7, 2019, 6:08 a.m.