alignment: Sample alignment of soluable epoxide hydrolase family
In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis
Description
Format
Value
References
Examples
Description
was performed on a dataset comprising 311 soluble epoxide hydrolase peptide orthologous sequences acquired from UniProtKB. The alignment was performed and edited with MUSCLE algorithm in JALVIEW, respectively.
Format
An alignment object read with read.alignment function from seqinr package.
- nb
A numeric: number of sequences
- nam
A vector of characters: names of the sequences
- seq
A vector of characters: amino acid sequences
Value
A character vector of length of the aligned sequence containing consesus sequence based on the input alignment
References
MUSCLE: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-113
JALVIEW: https://academic.oup.com/bioinformatics/article/25/9/1189/203460/Jalview-Version-2-a-multiple-sequence-alignment
Examples
1
2
michalstolarczyk/BALCONY documentation built on May 7, 2019, 6:08 a.m.
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Description Format Value References Examples
Description
was performed on a dataset comprising 311 soluble epoxide hydrolase peptide orthologous sequences acquired from UniProtKB. The alignment was performed and edited with MUSCLE algorithm in JALVIEW, respectively.
Format
An alignment object read with read.alignment function from seqinr package.
- nb
A numeric: number of sequences
- nam
A vector of characters: names of the sequences
- seq
A vector of characters: amino acid sequences
Value
A character vector of length of the aligned sequence containing consesus sequence based on the input alignment
References
MUSCLE: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-113
JALVIEW: https://academic.oup.com/bioinformatics/article/25/9/1189/203460/Jalview-Version-2-a-multiple-sequence-alignment
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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