Description Usage Arguments Value Examples
This function combines the entropy data for structure building amino acids with its indices. It prepares the data for convenient visualization or processing.
1 | prepare_structure_profile(structure, structure_entropy)
|
structure |
A structure data, the output of |
structure_entropy |
The entropy values for the structure building residues, the output of |
Each element is a list of entropy values (matrix of entropy scores) and indices of residues building structure in protein of interest.
1 2 3 4 5 6 7 8 9 10 | data("alignment")
data("structure")
uniprot="P34914"
indices=get_structures_idx(structure)
protein_index = indices$proteinIndices
structure_index = indices$structureIndices
entropy_scores_list=list(Schneider_entropy = schneider_conservativity(alignment),
Escore_entropy = Escore_conservativity(alignment))
structure_entropy=get_structures_entropy(structure_index, entropy_scores_list)
structure_profile = prepare_structure_profile(structure, structure_entropy)
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