prepare_structure_profile: Combine the entropy data for structure building amino acids...
In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis

Description Usage Arguments Value Examples

This function combines the entropy data for structure building amino acids with its indices. It prepares the data for convenient visualization or processing.

1	prepare_structure_profile(structure, structure_entropy)

`structure`	A structure data, the output of `create_structure_seq` function
`structure_entropy`	The entropy values for the structure building residues, the output of `get_structures_entropy` function

Each element is a list of entropy values (matrix of entropy scores) and indices of residues building structure in protein of interest.

data("alignment")
data("structure")
uniprot="P34914"
indices=get_structures_idx(structure)
protein_index = indices$proteinIndices
structure_index = indices$structureIndices
entropy_scores_list=list(Schneider_entropy = schneider_conservativity(alignment),
                                   Escore_entropy = Escore_conservativity(alignment))
structure_entropy=get_structures_entropy(structure_index, entropy_scores_list)
structure_profile = prepare_structure_profile(structure, structure_entropy)