get_remarks465_pdb: Get "REMARK 465" data from PDB file

In michalstolarczyk/BALCONY: Better ALignment CONsensus analYsis

Description

This function extracts the data concerning missing amino acids in PDB protein structure from the PDB file

Usage

get_remarks465_pdb(pdb_path, chain_identifier)

Arguments

pdb_path	A string specifying the path tp the PDB file
chain_identifier	A character specifying the chain to be considered

Value

aa_numbers	A numeric vector of indices of missing amino acids
chain	A character specifying the chain which was considered in remark 465 data extraction

Examples

require(Rpdb)
chain_identifier = "A"
pdb_path = system.file("extdata", "4jnc.pdb", package = "BALCONY")
print(pdb_path)
remark465_data = get_remarks465_pdb(pdb_path,chain_identifier)

michalstolarczyk/BALCONY documentation built on May 7, 2019, 6:08 a.m.