API for microsud/microbiomeutilities
microbiomeutilities: Utilities for Microbiome Analytics
| Global functions | |
|---|---|
| .check.group | Source code |
| abun_summary | Source code |
| add_refseq | Man page Source code |
| aggregate_top_taxa2 | Man page Source code |
| dominant_taxa | Man page Source code |
| find_samples_taxa | Man page Source code |
| format_to_besthit | Man page Source code |
| get_group_abundances | Man page Source code |
| get_microbiome_data | Man page Source code |
| get_tibble | Man page Source code |
| hmp2 | Man page |
| join_otu_tax | Man page Source code |
| list_microbiome_data | Man page Source code |
| make_pairs | Man page Source code |
| peak-methods | Man page |
| peak_abundance | Man page |
| peak_abundance,phyloseq-method | Man page |
| peak_base | Man page |
| peak_base,ANY-method | Man page |
| peak_sample | Man page |
| peak_sample,phyloseq-method | Man page |
| peak_taxonomy | Man page |
| peak_taxonomy,phyloseq-method | Man page |
| percent_classified | Man page Source code |
| phy_to_ldf | Man page Source code |
| plasticity | Man page Source code |
| plot_abund_prev | Man page Source code |
| plot_alpha_diversities | Man page Source code |
| plot_alpha_rcurve | Man page Source code |
| plot_area | Man page Source code |
| plot_diversity_stats | Man page Source code |
| plot_diversity_with_stats | Source code |
| plot_diversity_without_stats | Source code |
| plot_listed_taxa | Man page Source code |
| plot_ordination_utils | Man page Source code |
| plot_ordiplot_core | Man page Source code |
| plot_paired_abundances | Man page Source code |
| plot_read_distribution | Man page Source code |
| plot_select_taxa | Man page Source code |
| plot_spaghetti | Man page Source code |
| plot_spaghetti_sample | Source code |
| plot_spaghetti_taxa | Source code |
| plot_taxa_boxplot | Man page Source code |
| plot_taxa_composition | Man page Source code |
| plot_taxa_cv | Man page Source code |
| plot_taxa_heatmap | Man page Source code |
| prep_tern_otu | Man page Source code |
| prep_ternary | Man page Source code |
| print_ps | Man page Source code |
| rarefy_util | Man page Source code |
| simple_heatmap | Man page Source code |
| taxa_distribution | Man page Source code |
| taxa_pooler_mcola | Man page Source code |
| taxa_summary | Man page Source code |
| theme_biome_utils | Man page Source code |
| zackular2014 | Man page |
