add_refseq: Add refseq slot for dada2 based phyloseq object
In microsud/microbiomeutilities: microbiomeutilities: Utilities for Microbiome Analytics
add_refseq R Documentation
Add refseq slot for dada2 based phyloseq object
Description
Utility to add refseq slot for dada2 based phyloseq object. Here, the
rownames which are unique sequences, are stored in refseq slot of phyloseq. Sequence
ids are converted to ids using tag option.
Usage
add_refseq(x, tag = "ASV")
Arguments
x
phyloseq-class object with seqs as rownames.
tag
Provide name for Ids, Default="ASV".
Value
phyloseq-class object
Examples
# ps <- add_refseq(p0,tag="ASV")
# ps
microsud/microbiomeutilities documentation built on Nov. 29, 2022, 12:18 a.m.
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| add_refseq | R Documentation |
Add refseq slot for dada2 based phyloseq object
Description
Utility to add refseq slot for dada2 based phyloseq object. Here, the rownames which are unique sequences, are stored in refseq slot of phyloseq. Sequence ids are converted to ids using tag option.
Usage
add_refseq(x, tag = "ASV")
Arguments
x |
|
tag |
Provide name for Ids, Default="ASV". |
Value
phyloseq-class object
Examples
# ps <- add_refseq(p0,tag="ASV") # ps
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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