Man pages for microsud/microbiomeutilities
microbiomeutilities: An R package with utility functions for the microbiome R package

format_phyloseqFormatting the 'phyloseq-class' Object
format_to_besthitFormatting the 'phyloseq-class' Object advanced
get_microbiome_dataDownload test microbiome data
list_microbiome_dataList of available datasets
microbiome_pipelineMicrobiome analysis pipeline
percent_classifiedSummarize the percent taxa classification for...
phy_to_ldfConvert 'phyloseq-class' object to long data format
plot_alpha_diversitiesCreat a plot for alpha diversities calculated using the...
plot_ordination_utilsPlot species loading with ordinations
plot_ordiplot_corePlotting core microbiota on ordinations
plot_read_distributionDistribution of reads
plot_select_taxaA boxplot for user specified list of taxa
plot_taxa_boxplotTaxonomic Composition Plot boxplot
plot_taxa_compositionTaxonomic Composition Plot
plot_taxa_cvCoefficient of variations
plot_taxa_heatmapHeatmap using 'phyloseq-class' and 'pheatmap'
print_psOverview of 'phyloseq-class'
taxa_summaryGive taxa summary at specified taxonomic level
zackular2014Test data
microsud/microbiomeutilities documentation built on Oct. 7, 2018, 10:28 p.m.