get_tibble: Convert Phyloseq Slots to Tibbles
In microsud/microbiomeutilities: microbiomeutilities: Utilities for Microbiome Analytics
get_tibble R Documentation
Convert Phyloseq Slots to Tibbles
Description
Utility to convert phyloseq slots to tibbles.
Usage
get_tibble(x, slot = "otu_table", column_id = "column_id")
Arguments
x
phyloseq-class object
slot
Must be one of c("otu_table", "sam_data", "tax_table").
Default= "otu_table"
column_id
Provide name for the column which will hold the rownames of slot.
Value
A tibble
Examples
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
otu_tibble <- get_tibble(p0,slot="otu_table",column_id="OTUID")
head(otu_tibble)
microsud/microbiomeutilities documentation built on Nov. 29, 2022, 12:18 a.m.
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| get_tibble | R Documentation |
Convert Phyloseq Slots to Tibbles
Description
Utility to convert phyloseq slots to tibbles.
Usage
get_tibble(x, slot = "otu_table", column_id = "column_id")
Arguments
x |
|
slot |
Must be one of c("otu_table", "sam_data", "tax_table"). Default= "otu_table" |
column_id |
Provide name for the column which will hold the rownames of slot. |
Value
A tibble
Examples
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
otu_tibble <- get_tibble(p0,slot="otu_table",column_id="OTUID")
head(otu_tibble)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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