Files in microsud/microbiomeutilities
microbiomeutilities: An R package with utility functions for the microbiome R package

.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R R/firstlib.R R/format_phylo_tax.R R/format_phyloseq.R R/format_to_besthit.R R/get_microbiome_data.R R/list_microbiome_data.R R/microbiome_pipeline.R R/percent_classified.R R/phy_to_ldf.R R/plot_alpha_diversities.R R/plot_ordination_utils.R R/plot_ordiplot_core.R R/plot_read_distribution.R R/plot_select_taxa.R R/plot_taxa_boxplot.R R/plot_taxa_composition.R R/plot_taxa_cv.R R/plot_taxa_heatmap.R R/print_ps.R R/taxa_summary.R README.md
data/zackular2014.rda
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/microbiomeutilities.html
docs/articles/microbiomeutilities_files/figure-html/unnamed-chunk-10-1.png
docs/articles/microbiomeutilities_files/figure-html/unnamed-chunk-11-1.png
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docs/articles/microbiomeutilities_files/figure-html/unnamed-chunk-18-1.png
docs/articles/microbiomeutilities_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/docsearch.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Mock_report.html
docs/reference/biogeogut.html
docs/reference/format_phyloseq.html
docs/reference/format_to_besthit.html
docs/reference/get_microbiome_data.html
docs/reference/index.html
docs/reference/list_microbiome_data.html
docs/reference/microbiome_pipeline.html
docs/reference/percent_classified.html
docs/reference/phy_to_ldf.html
docs/reference/plot_alpha_diversities-1.png
docs/reference/plot_alpha_diversities.html
docs/reference/plot_ordination_utils-1.png
docs/reference/plot_ordination_utils.html
docs/reference/plot_ordiplot_core.html
docs/reference/plot_read_distribution-1.png
docs/reference/plot_read_distribution.html
docs/reference/plot_select_taxa-1.png
docs/reference/plot_select_taxa.html
docs/reference/plot_taxa_boxplot-1.png
docs/reference/plot_taxa_boxplot.html
docs/reference/plot_taxa_composition.html
docs/reference/plot_taxa_cv-1.png
docs/reference/plot_taxa_cv-2.png
docs/reference/plot_taxa_cv.html
docs/reference/plot_taxa_heatmap-1.png
docs/reference/plot_taxa_heatmap.html
docs/reference/print_ps.html
docs/reference/taxa_summary.html
docs/reference/theme_mutilties.html
docs/reference/zackular2014.html
index.Rmd
index.html
inst/NEWS
inst/extdata/Mock_report.html
inst/extdata/images/Anonymous-work-in-progress.png
inst/extdata/images/Rmarkdown_image.png
inst/extdata/images/boxplot.png
inst/extdata/images/heatmap.png
inst/extdata/microbiomeHD_ref.txt
inst/extdata/microbiomeHD_ref.xlsx
inst/extdata/theme_mutilties.R
inst/extdata/~$microbiomeHD_ref.xlsx
inst/extras/build.sh
inst/extras/document.R inst/microutility_template.rmd inst/rmarkdown/templates/microbiomeanalysisQC/skeleton/skeleton.Rmd
inst/rmarkdown/templates/microbiomeanalysisQC/template.yaml
man/format_phyloseq.Rd man/format_to_besthit.Rd man/get_microbiome_data.Rd man/list_microbiome_data.Rd man/microbiome_pipeline.Rd man/percent_classified.Rd man/phy_to_ldf.Rd man/plot_alpha_diversities.Rd man/plot_ordination_utils.Rd man/plot_ordiplot_core.Rd man/plot_read_distribution.Rd man/plot_select_taxa.Rd man/plot_taxa_boxplot.Rd man/plot_taxa_composition.Rd man/plot_taxa_cv.Rd man/plot_taxa_heatmap.Rd man/print_ps.Rd man/taxa_summary.Rd man/zackular2014.Rd
microbiomeutilities-master.Rproj
vignettes/microbiomeutilities.Rmd
microsud/microbiomeutilities documentation built on Oct. 7, 2018, 10:28 p.m.