taxa_summary: Give taxa summary at specified taxonomic level
In microsud/microbiomeutilities: microbiomeutilities: Utilities for Microbiome Analytics
taxa_summary R Documentation
Give taxa summary at specified taxonomic level
Description
Data frame with mean, max, median standard deviation of relative abundance.
Usage
taxa_summary(x, level)
Arguments
x
phyloseq-class object
level
Taxonomic level for which summary is required
Value
returns a data frame with relative abundance summary.
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
## Not run:
# Example data
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
p0.rel <- microbiome::transform(p0, "compositional")
tx.sum1 <- taxa_summary(p0, "Phylum")
tx.sum2 <- taxa_summary(p0.rel, "Phylum")
## End(Not run)
microsud/microbiomeutilities documentation built on Nov. 29, 2022, 12:18 a.m.
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| taxa_summary | R Documentation |
Give taxa summary at specified taxonomic level
Description
Data frame with mean, max, median standard deviation of relative abundance.
Usage
taxa_summary(x, level)
Arguments
x |
|
level |
Taxonomic level for which summary is required |
Value
returns a data frame with relative abundance summary.
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
## Not run:
# Example data
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
p0.rel <- microbiome::transform(p0, "compositional")
tx.sum1 <- taxa_summary(p0, "Phylum")
tx.sum2 <- taxa_summary(p0.rel, "Phylum")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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