plot_taxa_cv: Coefficient of variations
In microsud/microbiomeutilities: microbiomeutilities: Utilities for Microbiome Analytics
plot_taxa_cv R Documentation
Coefficient of variations
Description
Plots CV for OTUs/ASVs.
Usage
plot_taxa_cv(x, plot.type)
Arguments
x
phyloseq-class object.
plot.type
scatter or hist (histogram)
Details
Check if there are spurious OTUs/ASVs.
Value
A ggplot plot object.
Examples
## Not run:
# Example data
library(microbiome)
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
p <- plot_taxa_cv(p0, plot.type = "hist")
print(p)
## End(Not run)
microsud/microbiomeutilities documentation built on Nov. 29, 2022, 12:18 a.m.
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| plot_taxa_cv | R Documentation |
Coefficient of variations
Description
Plots CV for OTUs/ASVs.
Usage
plot_taxa_cv(x, plot.type)
Arguments
x |
|
plot.type |
scatter or hist (histogram) |
Details
Check if there are spurious OTUs/ASVs.
Value
A ggplot plot object.
Examples
## Not run:
# Example data
library(microbiome)
library(microbiomeutilities)
data("zackular2014")
p0 <- zackular2014
p <- plot_taxa_cv(p0, plot.type = "hist")
print(p)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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