phy_to_ldf | R Documentation |
phyloseq-class
object to long data formatAn alternative to psmelt function from phyloseq-class
object.
phy_to_ldf(x, transform.counts)
x |
|
transform.counts |
Data transform to be used in plotting
(but not in sample/taxon ordering). The options are 'Z-OTU', 'Z-Sample',
'log10' and 'compositional'. See the |
A data frame in long format with appropriate transfomation if requested
## Not run: # Example data library(microbiomeutilities) data("zackular2014") pseq <- zackular2014 pseq_df <- phy_to_ldf(pseq, transform.counts = NULL) ## End(Not run)
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