plot_read_distribution: Distribution of reads
In microsud/microbiomeutilities: microbiomeutilities: Utilities for Microbiome Analytics
View source: R/plot_read_distribution.R
plot_read_distribution R Documentation
Distribution of reads
Description
Plots distribution of reads.
Usage
plot_read_distribution(x, groups, plot.type = c("density", "histogram"))
Arguments
x
phyloseq-class object
groups
Metadata variable to check for groups based sequencing effort.
plot.type
Either density or histogram plot
Value
A ggplot plot object.
Author(s)
Contact: Sudarshan Shetty sudarshanshetty9@gmail.com
Examples
library(microbiome)
data(zackular2014)
ps0 <- zackular2014
p <- plot_read_distribution(ps0, groups = "DiseaseState", plot.type = "density")
print(p)
microsud/microbiomeutilities documentation built on Nov. 29, 2022, 12:18 a.m.
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View source: R/plot_read_distribution.R
| plot_read_distribution | R Documentation |
Distribution of reads
Description
Plots distribution of reads.
Usage
plot_read_distribution(x, groups, plot.type = c("density", "histogram"))
Arguments
x |
|
groups |
Metadata variable to check for groups based sequencing effort. |
plot.type |
Either density or histogram plot |
Value
A ggplot plot object.
Author(s)
Contact: Sudarshan Shetty sudarshanshetty9@gmail.com
Examples
library(microbiome) data(zackular2014) ps0 <- zackular2014 p <- plot_read_distribution(ps0, groups = "DiseaseState", plot.type = "density") print(p)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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