R/bibentries.R

In mlr-org/mlr3proba: Probabilistic Supervised Learning for 'mlr3'

bibentries = c(
  breiman_1984 = bibentry("book",
    title = "Classification And Regression Trees",
    author = "Leo Breiman and Jerome H. Friedman and Richard A. Olshen and Charles J. Stone",
    year  = 1984,
    publisher = "Routledge",
    doi = "10.1201/9781315139470"
  ),
  chambless_2006 = bibentry("article",
    title = "Estimation of time-dependent area under the {ROC} curve for long-term risk prediction",
    author = "Lloyd E. Chambless and Guoqing Diao",
    year  = 2006,
    journal = "Statistics in Medicine",
    publisher = "Wiley",
    volume = 25,
    number = 20,
    pages = "3474--3486",
    doi = "10.1002/sim.2299"
  ),
  cox_1972 = bibentry("article",
    title = "Regression Models and Life-Tables",
    author = "D. R. Cox",
    year  = 1972,
    month = "jan",
    journal = "Journal of the Royal Statistical Society: Series B (Methodological)",
    publisher = "Wiley",
    volume = 34,
    number = 2,
    pages = "187--202",
    doi = "10.1111/j.2517-6161.1972.tb00899.x"
  ),
  goenen_2005 = bibentry("article",
    title = "Concordance probability and discriminatory power in proportional hazards regression",
    author = "Mithat Goenen and Glenn Heller",
    year  = 2005,
    month = "dec",
    journal = "Biometrika",
    publisher = "Oxford University Press ({OUP})",
    volume = 92,
    number = 4,
    pages = "965--970",
    doi = "10.1093/biomet/92.4.965"
  ),
  graf_1999 = bibentry("article",
    title = "Assessment and comparison of prognostic classification schemes for survival data",
    author = "Erika Graf and Claudia Schmoor and Willi Sauerbrei and Martin Schumacher",
    year  = 1999,
    month = "sep",
    journal = "Statistics in Medicine",
    publisher = "Wiley",
    volume = 18,
    number = "17-18",
    pages = "2529--2545",
    doi = "10.1002/(sici)1097-0258(19990915/30)18:17/18<2529::aid-sim274>3.0.co;2-5"
  ),
  harrell_1982 = bibentry("article",
    title = "Evaluating the yield of medical tests",
    author = "Harrell, Frank E and Califf, Robert M and Pryor, David B and Lee, Kerry L and Rosati, Robert A",
    year  = 1982,
    journal = "Jama",
    publisher = "American Medical Association",
    volume = 247,
    number = 18,
    pages = "2543--2546"
  ),
  hung_2010 = bibentry("article",
    title = "Estimation methods for time-dependent AUC models with survival data",
    author = "Hung Hung and Chin-Tsang Chiang",
    year  = 2010,
    journal = "The Canadian Journal of Statistics / La Revue Canadienne de Statistique",
    publisher = "Statistical Society of Canada, Wiley",
    volume = 38,
    number = 1,
    pages = "8--26",
    url = "https://www.jstor.org/stable/27805213"
  ),
  ishwaran_2008 = bibentry("article",
    title = "Random survival forests",
    author = "Ishwaran, Hemant and Kogalur, Udaya B and Blackstone, Eugene H and Lauer, Michael S and others",
    year  = 2008,
    journal = "The Annals of applied statistics",
    publisher = "Institute of Mathematical Statistics",
    volume = 2,
    number = 3,
    pages = "841--860"
  ),
  kalbfleisch_2002 = bibentry("book",
    title = "The Statistical Analysis of Failure Time Data",
    author = "John D. Kalbfleisch and Ross L. Prentice",
    year  = 2002,
    month = "aug",
    publisher = "John Wiley & Sons, Inc.",
    doi = "10.1002/9781118032985"
  ),
  kaplan_1958 = bibentry("article",
    title = "Nonparametric Estimation from Incomplete Observations",
    author = "E. L. Kaplan and Paul Meier",
    year  = 1958,
    month = "jun",
    journal = "Journal of the American Statistical Association",
    publisher = "Informa {UK} Limited",
    volume = 53,
    number = 282,
    pages = "457--481",
    doi = "10.1080/01621459.1958.10501452"
  ),
  nagelkerke_1991 = bibentry("article",
    title = "A note on a general definition of the coefficient of determination",
    author = "Nagelkerke, Nico JD and others",
    year  = 1991,
    journal = "Biometrika",
    publisher = "Oxford University Press",
    volume = 78,
    number = 3,
    pages = "691--692"
  ),
  oquigley_2005 = bibentry("article",
    title = "Explained randomness in proportional hazards models",
    author = "John O'Quigley and Ronghui Xu and Janez Stare",
    year  = 2005,
    journal = "Statistics in Medicine",
    publisher = "Wiley",
    volume = 24,
    number = 3,
    pages = "479--489",
    doi = "10.1002/sim.1946"
  ),
  song_2008 = bibentry("article",
    title = "A semiparametric approach for the covariate specific ROC curve with survival outcome",
    author = "Song, Xiao and Zhou, Xiao-Hua",
    year  = 2008,
    journal = "Statistica Sinica",
    volume = 18,
    number = 3,
    pages = "947--65",
    url = "https://www.jstor.org/stable/24308524"
  ),
  uno_2007 = bibentry("article",
    title = "Evaluating Prediction Rules fort-Year Survivors With Censored Regression Models",
    author = "Hajime Uno and Tianxi Cai and Lu Tian and L. J Wei",
    year  = 2007,
    month = "jun",
    journal = "Journal of the American Statistical Association",
    publisher = "Informa {UK} Limited",
    volume = 102,
    number = 478,
    pages = "527--537",
    doi = "10.1198/016214507000000149"
  ),
  uno_2011 = bibentry("article",
    title = "On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data",
    author = "Hajime Uno and Tianxi Cai and Michael J. Pencina and Ralph B. D'Agostino and L. J. Wei",
    year  = 2011,
    journal = "Statistics in Medicine",
    publisher = "Wiley",
    pages = "n/a--n/a",
    doi = "10.1002/sim.4154"
  ),
  xu_1999 = bibentry("article",
    title = "A R2 type measure of dependence for proportional hazards models",
    author = "Ronghui Xu and John O'Quigley",
    year  = 1999,
    month = "jan",
    journal = "Journal of Nonparametric Statistics",
    publisher = "Informa {UK} Limited",
    volume = 12,
    number = 1,
    pages = "83--107",
    doi = "10.1080/10485259908832799"
  ),
  silverman_1986 = bibentry("book",
    address = "London",
    author = "Silverman, B. W.",
    biburl = "https://www.bibsonomy.org/bibtex/25c3b630fb0a76da55942a77551fde8a2/pierpaolo.pk81",
    description = "WSD",
    publisher = "Chapman & Hall",
    timestamp = "2007-02-27T16:22:14.000+0100",
    title = "Density Estimation for Statistics and Data Analysis",
    year  = 1986
  ),
  schemper_2000 = bibentry("article",
    author = "Schemper, Michael and Henderson, Robin",
    doi = "10.1002/sim.1486",
    journal = "Biometrics",
    pages = "249--255",
    pmid  = "12854094",
    title = "Predictive Accuracy and Explained Variation in Cox Regression",
    volume = "56",
    year  = "2000"
  ),
  schmid_2011 = bibentry("article",
    author = "Schmid, Matthias and Hielscher, Thomas and Augustin, Thomas and Gefeller, Olaf",
    doi = "10.1111/j.1541-0420.2010.01459.x",
    journal = "Biometrics",
    number = "2",
    pages = "524--535",
    pmid  = "20618308",
    title = "A Robust Alternative to the Schemper-Henderson Estimator of Prediction Error",
    volume = "67",
    year  = "2011"
  ),
  vanhouwelingen_2000 = bibentry("article",
    author = "Van Houwelingen, Hans C.",
    doi = "10.1002/1097-0258(20001230)19:24<3401::AID-SIM554>3.0.CO;2-2",
    journal = "Statistics in Medicine",
    number = "24",
    pages = "3401--3415",
    pmid  = "11122504",
    title = "Validation, calibration, revision and combination of prognostic survival models",
    volume = "19",
    year  = "2000"
  ),
  peto_1972 = bibentry("article",
    author = "Peto, Richard and Peto, Julian",
    journal = "Journal of the Royal Statistical Society: Series A (General)",
    number = "2",
    pages = "185--198",
    publisher = "Wiley Online Library",
    title = "Asymptotically efficient rank invariant test procedures",
    volume = "135",
    year  = "1972"
  ),
  schemper_2009 = bibentry("article",
    author = "Schemper, Michael and Wakounig, Samo and Heinze, Georg",
    doi = "10.1002/sim.3623",
    journal = "Statistics in Medicine",
    month = "aug",
    number = "19",
    pages = "2473--2489",
    publisher = "John Wiley & Sons, Ltd",
    title = "The estimation of average hazard ratios by weighted Cox regression",
    volume = "28",
    year  = "2009"
  ),
  vock_2016 = bibentry("article",
    author = "Vock, David M and Wolfson, Julian and Bandyopadhyay, Sunayan and Adomavicius, Gediminas and Johnson, Paul E and Vazquez-Benitez, Gabriela and O'Connor, Patrick J",
    doi = "https://doi.org/10.1016/j.jbi.2016.03.009",
    journal = "Journal of Biomedical Informatics",
    pages = "119--131",
    title = "Adapting machine learning techniques to censored time-to-event health record data: A general-purpose approach using inverse probability of censoring weighting",
    url = "https://www.sciencedirect.com/science/article/pii/S1532046416000496",
    volume = "61",
    year  = "2016"
  ),
  klein_2003 = bibentry("book",
    author = "Klein, John P and Moeschberger, Melvin L",
    edition = "2",
    isbn  = "0387216456",
    publisher = "Springer Science & Business Media",
    title = "Survival analysis: techniques for censored and truncated data",
    year  = "2003"
  ),
  haider_2020 = bibentry("article",
    author = "Haider, Humza and Hoehn, Bret and Davis, Sarah and Greiner, Russell",
    journal = "Journal of Machine Learning Research",
    volume = "21",
    number = "85",
    pages = "1--63",
    title = "Effective Ways to Build and Evaluate Individual Survival Distributions",
    url = "https://jmlr.org/papers/v21/18-772.html",
    year  = "2020"
  ),
  breslow_1972 = bibentry("article",
    author = "Norman Breslow",
    title = "Discussion of 'Regression Models and Life-Tables' by D.R. Cox",
    journal = "Journal of the Royal Statistical Society: Series B",
    year  = "1972",
    volume = "34",
    number = "2",
    pages = "216-217"
  ),
  lin_2007 = bibentry("article",
    author = "Lin, D. Y.",
    title = "On the Breslow estimator",
    journal = "Lifetime Data Analysis",
    year  = "2007",
    volume = "13",
    number = "4",
    pages = "471-480",
    publisher = "Springer",
    doi = "10.1007/s10985-007-9048-y"
  ),
  avati_2020 = bibentry("article",
    author = "Avati, Anand and Duan, Tony and Zhou, Sharon and Jung, Kenneth and Shah, Nigam H and Ng, Andrew Y",
    title = "Countdown Regression: Sharp and Calibrated Survival Predictions",
    journal = "Proceedings of The 35th Uncertainty in Artificial Intelligence Conference",
    year  = "2020",
    volume = "115",
    number = "4",
    series = "Proceedings of Machine Learning Research",
    pages = "145--155",
    publisher = "PMLR",
    url = "https://proceedings.mlr.press/v115/avati20a.html"
  ),
  rindt_2022 = bibentry("article",
    author = "Rindt, David and Hu, Robert and Steinsaltz, David and Sejdinovic, Dino",
    title = "Survival regression with proper scoring rules and monotonic neural networks",
    journal = "Proceedings of The 25th International Conference on Artificial Intelligence and Statistics",
    year  = "2022",
    volume = "151",
    number = "4",
    series = "Proceedings of Machine Learning Research",
    pages = "1190--1205",
    publisher = "PMLR",
    url = "https://proceedings.mlr.press/v151/rindt22a.html"
  ),
  grambsch_1994 = bibentry("article",
    author = "Grambsch, Patricia and Therneau, Terry",
    title = "Proportional hazards tests and diagnostics based on weighted residuals",
    journal = "Biometrika",
    year  = "1994",
    volume = "81",
    number = "3",
    pages = "515--526",
    doi = "10.1093/biomet/81.3.515",
    url = "https://doi.org/10.1093/biomet/81.3.515"
  ),
  tutz_2016 = bibentry("book",
    author = "Tutz, Gerhard and Schmid, Matthias",
    title = "Modeling Discrete Time-to-Event Data",
    year = "2016",
    publisher = "Springer International Publishing",
    series = "Springer Series in Statistics",
    isbn = "978-3-319-28156-8 978-3-319-28158-2",
    url = "http://link.springer.com/10.1007/978-3-319-28158-2"
  ),
  sonabend_2022 = bibentry("article",
    author = "Sonabend, Raphael and Bender, Andreas and Vollmer, Sebastian",
    doi = "10.1093/BIOINFORMATICS/BTAC451",
    editor = "Lu, Zhiyong",
    isbn = "451/6640155",
    issn = "1367-4803",
    journal = "Bioinformatics",
    month = "jul",
    title = "Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures",
    url = "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac451/6640155",
    year = "2022"
  ),
  zhao_2016 = bibentry("article",
    author = "Zhao, Lihui and Claggett, Brian and Tian, Lu and Uno, Hajime and Pfeffer, Marc A. and Solomon, Scott D. and Trippa, Lorenzo and Wei, L. J.",
    doi = "10.1111/BIOM.12384",
    issn = "1541-0420",
    journal = "Biometrics",
    month = "mar",
    number = "1",
    pages = "215--221",
    publisher = "John Wiley & Sons, Ltd",
    title = "On the restricted mean survival time curve in survival analysis",
    url = "https://onlinelibrary.wiley.com/doi/full/10.1111/biom.12384",
    volume = "72",
    year = "2016"
  ),
  norman_2024 = bibentry("article",
    author = "Norman, Patrick A and Li, Wanlu and Jiang, Wenyu and Chen, Bingshu E",
    title = "deepAFT: A nonlinear accelerated failure time model with artificial neural network",
    journal = "Statistics in Medicine",
    year = "2024",
    publisher = "Wiley Online Library",
    doi = "10.1002/sim.10152"
  ),
  harden_2019 = bibentry("article",
    author = "Harden, Jeffrey J. and Kropko, Jonathan",
    doi = "10.1017/PSRM.2018.19",
    journal = "Political Science Research and Methods",
    month = "oct",
    number = "4",
    pages = "921--928",
    publisher = "Cambridge University Press",
    title = "Simulating Duration Data for the Cox Model",
    volume = "7",
    year = "2019"
  ),
  brilleman_2021 = bibentry("article",
    author = "Brilleman, Samuel L. and Wolfe, Rory and Moreno-Betancur, Margarita and Crowther, Michael J.",
    doi = "10.18637/JSS.V097.I03",
    journal = "Journal of Statistical Software",
    month = "jan",
    number = "3",
    pages = "1--27",
    publisher = "American Statistical Association",
    title = "Simulating Survival Data Using the simsurv R Package",
    volume = "97",
    year = "2021"
  ),
  sonabend2024 = bibentry("misc",
    archivePrefix = "arXiv",
    arxivId = "2212.05260",
    author = "Sonabend, Raphael and Zobolas, John and Kopper, Philipp and Burk, Lukas and Bender, Andreas",
    month = "dec",
    title = "Examining properness in the external validation of survival models with squared and logarithmic losses",
    url = "https://arxiv.org/abs/2212.05260v2",
    year = "2024"
  ),
  kvamme2023 = bibentry("article",
    author = "Kvamme, Havard and Borgan, Ornulf",
    issn = "1533-7928",
    journal = "Journal of Machine Learning Research",
    number = "2",
    pages = "1--26",
    title = "The Brier Score under Administrative Censoring: Problems and a Solution",
    url = "http://jmlr.org/papers/v24/19-1030.html",
    volume = "24",
    year = "2023"
  ),
  austin2020 = bibentry("article",
    author = "Austin, Peter C. and Harrell, Frank E. and van Klaveren, David",
    doi = "10.1002/SIM.8570",
    issn = "10970258",
    journal = "Statistics in Medicine",
    month = "sep",
    number = "21",
    pages = "2714",
    pmid = "32548928",
    publisher = "John Wiley and Sons Ltd",
    title = "Graphical calibration curves and the integrated calibration index (ICI) for survival models",
    url = "https://pmc.ncbi.nlm.nih.gov/articles/PMC7497089/",
    volume = "39",
    year = "2020"
  ),
  bender_2018 = bibentry("article",
    author  = "Bender, Andreas and Groll, Andreas and Scheipl, Fabian",
    title   = "A generalized additive model approach to time-to-event analysis",
    journal = "Statistical Modelling",
    volume  = "18",
    number  = "3-4",
    pages   = "299--321",
    url     = "https://doi.org/10.1177/1471082X17748083",
    year    = "2018"
  )
  
  
)