Files in mojaveazure/seurat-object

Data Structures for Single Cell Data

LICENSE.md NEWS.md R/RcppExports.R R/assay.R R/assay5.R R/centroids.R R/command.R R/compliance.R R/data.R R/default.R R/dimreduc.R R/fov.R R/generics.R R/graph.R R/jackstraw.R R/keymixin.R R/layers.R R/logmap.R R/molecules.R R/neighbor.R R/segmentation.R R/seurat.R R/sparse.R R/spatial.R R/utils.R R/zzz.R README.Rmd README.md cran-comments.md man/AddMetaData-StdAssay.Rd man/AddMetaData.Rd man/Boundaries.Rd man/CastAssay-StdAssay.Rd man/CastAssay.Rd man/Cells-StdAssay.Rd man/Cells.Rd man/CellsByIdentities.Rd man/CellsByImage.Rd man/Centroids-class.Rd man/Centroids-methods.Rd man/CheckDots.Rd man/CheckFeaturesNames.Rd man/CheckGC.Rd man/CheckLayersName.Rd man/CheckMatrix.Rd man/ClassKey.Rd man/Command.Rd man/CreateAssay5Object.Rd man/CreateAssayObject.Rd man/CreateCentroids.Rd man/CreateDimReducObject.Rd man/CreateFOV.Rd man/CreateMolecules.Rd man/CreateSegmentation.Rd man/CreateSeuratObject.Rd man/Crop.Rd man/DefaultAssay-StdAssay.Rd man/DefaultAssay.Rd man/DefaultDimReduc.Rd man/DefaultFOV.Rd man/DefaultLayer-StdAssay.Rd man/DefaultLayer.Rd man/Distances.Rd man/Embeddings.Rd man/EmptyDF.Rd man/EmptyMatrix.Rd man/ExtractField.Rd man/FOV-methods.Rd man/FOV-validity.Rd man/FetchData.Rd man/GetImage.Rd man/GetTissueCoordinates.Rd man/Graph-class.Rd man/Idents.Rd man/Images.Rd man/Indices.Rd man/IsGlobal.Rd man/IsMatrixEmpty.Rd man/IsNamedList.Rd man/IsSparse.Rd man/JS.Rd man/JackStrawData-class.Rd man/JackStrawData-methods.Rd man/Key.Rd man/Loadings.Rd man/LogMap-class.Rd man/LogMap-validity.Rd man/LogSeuratCommand.Rd man/MatchCells.Rd man/Misc-StdAssay.Rd man/Misc.Rd man/Molecules-class.Rd man/Molecules-methods.Rd man/NNIndex.Rd man/Neighbor-class.Rd man/Neighbor-methods.Rd man/ObjectAccess.Rd man/Overlay.Rd man/PolyVtx.Rd man/Project.Rd man/Radius.Rd man/RandomName.Rd man/RegisterSparseMatrix.Rd man/RenameAssays.Rd man/RenameCells-StdAssay.Rd man/RenameCells.Rd man/RowMergeSparseMatrices.Rd man/Segmentation-class.Rd man/Segmentation-methods.Rd man/Seurat-class.Rd man/Seurat-validity.Rd man/SeuratCommand-class.Rd man/SeuratObject-package.Rd man/Simplify.Rd man/SparseEmptyMatrix.Rd man/SpatialImage-methods.Rd man/SplitLayers.Rd man/Stdev.Rd man/StitchMatrix.Rd man/Theta.Rd man/Tool.Rd man/UpdateSeuratObject.Rd man/UpdateSlots.Rd man/Version.Rd man/WhichCells.Rd man/aggregate.Rd man/angles.Rd man/as.Centroids.Rd man/as.Graph.Rd man/as.Neighbor.Rd man/as.Seurat.Rd man/as.list.SeuratCommand.Rd man/as.matrix.LogMap.Rd man/as.sparse.Rd man/cash-.Assay.Rd man/cash-.Assay5.Rd man/cash-.Seurat.Rd man/cash-.SeuratCommand.Rd man/cash-.StdAssay.Rd man/colMeans-Assay-method.Rd man/colMeans-Seurat-method.Rd man/dim.Assay.Rd man/dim.Assay5.Rd man/dim.DimReduc.Rd man/dim.Seurat.Rd man/dim.StdAssay.Rd man/dimnames.Assay.Rd man/dimnames.Assay5.Rd man/dimnames.Seurat.Rd man/dimnames.StdAssay.Rd man/dot-AssayClass.Rd man/dot-BPMatrixMode.Rd man/dot-CalcN.Rd man/dot-CheckFmargin.Rd man/dot-ClassPkg.Rd man/dot-Collections.Rd man/dot-Contains.Rd man/dot-CreateStdAssay.Rd man/dot-DefaultFOV.Rd man/dot-Deprecate.Rd man/dot-DiskLoad.Rd man/dot-DollarNames.Assay.Rd man/dot-DollarNames.Assay5.Rd man/dot-DollarNames.Seurat.Rd man/dot-DollarNames.SeuratCommand.Rd man/dot-DollarNames.StdAssay.Rd man/dot-FileMove.Rd man/dot-FilePath.Rd man/dot-FilterObjects.Rd man/dot-FindObject.Rd man/dot-GetMethod.Rd man/dot-IsFutureSeurat.Rd man/dot-MARGIN.Rd man/dot-PropagateList.Rd man/dot-RandomKey.Rd man/dot-SelectFeatures.Rd man/dot-SparseSlots.Rd man/dot-Subobjects.Rd man/droplevels.LogMap.Rd man/intersect.LogMap.Rd man/labels.LogMap.Rd man/merge.Assay.Rd man/merge.Assay5.Rd man/merge.DimReduc.Rd man/merge.Seurat.Rd man/merge.StdAssay.Rd man/names.Seurat.Rd man/old-assign.Rd man/oldseurat-class.Rd man/pbmc_small.Rd man/print.DimReduc.Rd man/reexports.Rd man/roxygen/meta.R man/roxygen/templates/desc-validity.R man/roxygen/templates/lifecycle-deprecated.R man/roxygen/templates/lifecycle-experimental.R man/roxygen/templates/lifecycle-superseded.R man/roxygen/templates/method-cells.R man/roxygen/templates/method-features.R man/roxygen/templates/method-lengths.R man/roxygen/templates/method-show.R man/roxygen/templates/method-stdassay.R man/roxygen/templates/name-oldv.R man/roxygen/templates/note-reqdpkg.R man/roxygen/templates/param-dots-ignored.R man/roxygen/templates/param-dots-method.R man/roxygen/templates/param-verbose.R man/roxygen/templates/return-null.R man/roxygen/templates/return-show.R man/roxygen/templates/section-future.R man/roxygen/templates/section-progressr.R man/roxygen/templates/seealso-methods.R man/roxygen/templates/slot-key.R man/roxygen/templates/slot-misc.R man/roxygen/templates/slot-stdassay.R man/s4list.Rd man/set-if-na.Rd man/set-if-null.Rd man/show-Assay-method.Rd man/show-DimReduc-method.Rd man/show-Graph-method.Rd man/show-LogMap-method.Rd man/show-Seurat-method.Rd man/show-SeuratCommand-method.Rd man/show-StdAssay-method.Rd man/show-oldseurat-method.Rd man/split.Assay.Rd man/split.Assay5.Rd man/split.Seurat.Rd man/split.StdAssay.Rd man/sub-.Assay.Rd man/sub-.Assay5.Rd man/sub-.DimReduc.Rd man/sub-.SeuratCommand.Rd man/sub-.StdAssay.Rd man/sub-LogMap-method.Rd man/sub-sub-.Assay.Rd man/sub-sub-.Assay5.Rd man/sub-sub-.DimReduc.Rd man/sub-sub-.Seurat.Rd man/sub-sub-.StdAssay.Rd man/sub-sub-LogMap-internal-method.Rd man/sub-subset-Seurat-NULL.Rd man/sub-subset-Seurat-character-missing-StdAssay-method.Rd man/sub-subset-Seurat.Rd man/subset.Assay.Rd man/subset.Assay5.Rd man/subset.DimReduc.Rd man/subset.Seurat.Rd man/subset.StdAssay.Rd man/v5-assay-summaries.Rd tests/testthat.R tests/testthat/test_logmap.R tests/testthat/test_matrix.R tests/testthat/test_objects.R