CellTagDataForCollapsing: CellTag Starcode Prior Collapsing
In morris-lab/CloneHunter: Identify Clonal Identity from ScRNA-Seq and CellTag Data
Description
Usage
Arguments
Value
Examples
Description
This function generate the .txt file that will be fed into starcode - https://github.com/gui11aume/starcode - to collapse similar CellTags.
Usage
1
CellTagDataForCollapsing(ctm.after.whitelist, umi.matrix, output.file)
Arguments
ctm.after.whitelist
CellTag single-cell matrix after whitelist filtering
umi.matrix
CellTag raw UMI count matrix
output.file
The filepath and name to save the table for collapsing
Value
The data frame for collapsing
Examples
1
CellTagDataForCollapsing(celltags.whitelisted.3, combo.umi.mat.10, "my_favoriate_collapse.csv")
morris-lab/CloneHunter documentation built on June 12, 2019, 11:01 a.m.
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Description Usage Arguments Value Examples
Description
This function generate the .txt file that will be fed into starcode - https://github.com/gui11aume/starcode - to collapse similar CellTags.
Usage
1 | CellTagDataForCollapsing(ctm.after.whitelist, umi.matrix, output.file)
|
Arguments
ctm.after.whitelist |
CellTag single-cell matrix after whitelist filtering |
umi.matrix |
CellTag raw UMI count matrix |
output.file |
The filepath and name to save the table for collapsing |
Value
The data frame for collapsing
Examples
1 | CellTagDataForCollapsing(celltags.whitelisted.3, combo.umi.mat.10, "my_favoriate_collapse.csv")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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