Description Usage Arguments Value Examples
This function generate the .txt file that will be fed into starcode - https://github.com/gui11aume/starcode - to collapse similar CellTags.
1 | CellTagDataForCollapsing(ctm.after.whitelist, umi.matrix, output.file)
|
ctm.after.whitelist |
CellTag single-cell matrix after whitelist filtering |
umi.matrix |
CellTag raw UMI count matrix |
output.file |
The filepath and name to save the table for collapsing |
The data frame for collapsing
1 | CellTagDataForCollapsing(celltags.whitelisted.3, combo.umi.mat.10, "my_favoriate_collapse.csv")
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