CellTagDataForCollapsing: CellTag Starcode Prior Collapsing

Description Usage Arguments Value Examples

View source: R/CellTagForCollapsing.R

Description

This function generate the .txt file that will be fed into starcode - https://github.com/gui11aume/starcode - to collapse similar CellTags.

Usage

1
CellTagDataForCollapsing(ctm.after.whitelist, umi.matrix, output.file)

Arguments

ctm.after.whitelist

CellTag single-cell matrix after whitelist filtering

umi.matrix

CellTag raw UMI count matrix

output.file

The filepath and name to save the table for collapsing

Value

The data frame for collapsing

Examples

1
CellTagDataForCollapsing(celltags.whitelisted.3, combo.umi.mat.10, "my_favoriate_collapse.csv")

morris-lab/CloneHunter documentation built on Jan. 6, 2019, 3:04 a.m.