CloneCalling: Clone Calling Function

In morris-lab/CloneHunter: Identify Clonal Identity from ScRNA-Seq and CellTag Data

Description

This function conducts clone calling based on the Jaccard results

Usage

CloneCalling(Jaccard.Matrix, output.dir, output.filename,
  correlation.cutoff)

Arguments

Jaccard.Matrix	The Jaccard matrix
output.dir	Which directory would you like to save your clone table information?
output.filename	Which CSV file would you like to save the clone table into?
correlation.cutoff	Correlation cutoff for clone membership

Value

A list of clone table with membership of each cell and clone size counting table.

Examples

CloneCalling(Jac, "~/Desktop/", "My_Favourite_CloneCalling.csv", 0.7)

morris-lab/CloneHunter documentation built on June 12, 2019, 11:01 a.m.