CellTagDataPostCollapsing: CellTag Starcode Post Collapsing

Description Usage Arguments Value Examples

View source: R/CellTagForCollapsing.R

Description

This function processes the result generated from starcode - https://github.com/gui11aume/starcode.

Usage

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CellTagDataPostCollapsing(ctm.after.whitelist, collapsed.rslt.file,
  collapsed.csv.file, output.file)

Arguments

ctm.after.whitelist

CellTag single-cell matrix after whitelist filtering

collapsed.rslt.file

File path to the collapsed result file

collapsed.csv.file

File path to the data frame file generated for collapsing

output.file

The RDS file path and name to save the resulting UMI matrix

Value

The collapsed and processed UMI matrices

Examples

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CellTagDataPostCollapsing(celltags.whitelisted.3, "collapsed_test.txt", "collapsed.csv", "collapsed_data_matrix.Rds")

morris-lab/CloneHunter documentation built on Jan. 6, 2019, 3:04 a.m.