CellTagDataPostCollapsing: CellTag Starcode Post Collapsing

In morris-lab/CloneHunter: Identify Clonal Identity from ScRNA-Seq and CellTag Data

Description

This function processes the result generated from starcode - https://github.com/gui11aume/starcode.

Usage

CellTagDataPostCollapsing(ctm.after.whitelist, collapsed.rslt.file,
  collapsed.csv.file, output.file)

Arguments

ctm.after.whitelist	CellTag single-cell matrix after whitelist filtering
collapsed.rslt.file	File path to the collapsed result file
collapsed.csv.file	File path to the data frame file generated for collapsing
output.file	The RDS file path and name to save the resulting UMI matrix

Value

The collapsed and processed UMI matrices

Examples

CellTagDataPostCollapsing(celltags.whitelisted.3, "collapsed_test.txt", "collapsed.csv", "collapsed_data_matrix.Rds")

morris-lab/CloneHunter documentation built on June 12, 2019, 11:01 a.m.