MetricBasedFiltering: Metric-Base Filtering Function

Description Usage Arguments Value Examples

View source: R/CellTagCloneCalling_Function.R

Description

This function applies further filtering on scRNA-seq data with CellTags based on cutoff values identified from the metric plots

Usage

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MetricBasedFiltering(whitelisted.celltag.data, cutoff,
  comparison = "less")

Arguments

whitelisted.celltag.data

The single-cell data with whitelisted celltag.

cutoff

The cutoff decided from the metric plots

comparison

Would you like to maintain the part less than/greater than the cutoff? Default to less. Choices can be greater or less.

Value

A new scRNA-seq data frame with CellTags that passes the metric-based filtering

Examples

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MetricBasedFiltering(celltags.whitelisted, 20, "less")

morris-lab/CloneHunter documentation built on Jan. 6, 2019, 3:04 a.m.