MetricBasedFiltering: Metric-Base Filtering Function

In morris-lab/CloneHunter: Identify Clonal Identity from ScRNA-Seq and CellTag Data

Description

This function applies further filtering on scRNA-seq data with CellTags based on cutoff values identified from the metric plots

Usage

MetricBasedFiltering(whitelisted.celltag.data, cutoff,
  comparison = "less")

Arguments

whitelisted.celltag.data	The single-cell data with whitelisted celltag.
cutoff	The cutoff decided from the metric plots
comparison	Would you like to maintain the part less than/greater than the cutoff? Default to less. Choices can be greater or less.

Value

A new scRNA-seq data frame with CellTags that passes the metric-based filtering

Examples

MetricBasedFiltering(celltags.whitelisted, 20, "less")

morris-lab/CloneHunter documentation built on June 12, 2019, 11:01 a.m.