Description Usage Arguments Value Examples
This function conducts whitelist filtering such that only CellTags with count number over their certain percentile would be considered for clone calling
1 2 | CellTagWhitelistFiltering(count.sorted.table, percentile, output.dir,
output.count.file, save.output = TRUE)
|
count.sorted.table |
The count table for all CellTags with first column being CellTag and second being counts. |
percentile |
A fraction cutoff percentile for filtering the CellTags e.g. 0.9 for 90th percentile |
output.dir |
Which directory would you like to store these files? |
output.count.file |
Which CSV filename would you like to save to for the filtered count table? Default to NULL. If NULL but save.output = TRUE, automatic names will be generated and used for storage |
save.output |
Would you like to save your whitelisted counts to file? Default to TRUE |
Whitelisted CellTag count table
1 | CellTagWhitelistFiltering("data.txt", 0.9, "~/Desktop/", "My_Favourite_Whitelist.csv")
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