CellTagMatrixCount: CellTag Matrix Generation Function

Description Usage Arguments Value Examples

View source: R/CellTagExtraction_Function.R

Description

This function uses the extract information from data processed before and generate a Cell Barcode x CellTag matrix

Usage

1
CellTagMatrixCount(barcodes.file, celltag.read.data.file)

Arguments

barcodes.file

A .tsv output file from 10x CellRanger pipeline. It contains a list of all cell barcodes identified in the filtered dataset.

celltag.read.data.file

A .tsv output file that contains information about the parsed Cell barcode, UMI, CellTag data

Value

Cell Barcodes x CellTag matrix

Examples

1
CellTagMatrixCount("barcodes.tsv", "D0_V1_tag_info.tsv")

morris-lab/CloneHunter documentation built on Jan. 6, 2019, 3:04 a.m.