CellTagMatrixCount: CellTag Matrix Generation Function

In morris-lab/CloneHunter: Identify Clonal Identity from ScRNA-Seq and CellTag Data

Description

This function uses the extract information from data processed before and generate a Cell Barcode x CellTag matrix

Usage

CellTagMatrixCount(barcodes.file, celltag.read.data.file)

Arguments

barcodes.file	A .tsv output file from 10x CellRanger pipeline. It contains a list of all cell barcodes identified in the filtered dataset.
celltag.read.data.file	A .tsv output file that contains information about the parsed Cell barcode, UMI, CellTag data

Value

Cell Barcodes x CellTag matrix

Examples

CellTagMatrixCount("barcodes.tsv", "D0_V1_tag_info.tsv")

morris-lab/CloneHunter documentation built on June 12, 2019, 11:01 a.m.