run_onevax_xvw: Run model with single vaccine for input parameter sets,...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are not eligible for revaccination.

Description

Run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are not eligible for revaccination.

Usage

run_onevax_xvw(
  tt,
  gono_params,
  init_params = NULL,
  dur = 1000,
  vea = 0,
  vei = 0,
  ved = 0,
  ves = 0,
  vbe = coverage,
  n_diag_rec = 1,
  uptake = 0,
  strategy = NULL,
  coverage = 0,
  t_stop = 99
)

Arguments

tt	a numeric vector of times at which the model state is output
gono_params	list of gono params
init_params	A list of starting conditions
dur	scalar or numeric vector with same length as 'gono_params' giving duration of the vaccine (in years)
vea	scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against acquisition (between 0-1)
vei	scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against infectiousness (between 0-1)
ved	scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against duration (between 0-1)
ves	scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against symptoms (between 0-1)
vbe	scalar giving uptake of vaccination before entry into population (i.e. adolescent vaccination) defaults to same as @param n_diag_rec integer for the number of diagnosis history substrata 'coverage'
n_diag_rec	integer for the number of diagnosis history substrata
uptake	scalar or numeric vector with same length as 'gono_params' giving pc of population vaccinated as part of strategy
strategy	single character string in "VoD", "VoD(H)", "VoA", "VoA(H)", "VoD(L)+VoA(H)". Defaults to NULL i.e. no vaccination
coverage	scalar giving initial coverage of vaccination, default 0.
t_stop	time at which vaccination should stop (years)

mrc-ide/gonovax documentation built on Dec. 15, 2024, 11:02 a.m.