run_onevax_xvwv: run model with single vaccine for input parameter sets,...

View source: R/onevax_xvwv.R

run_onevax_xvwvR Documentation

run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are eligible for revaccination, and return to the V compartment

Description

run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are eligible for revaccination, and return to the V compartment

Usage

run_onevax_xvwv(
  tt,
  gono_params,
  init_params = NULL,
  dur = 1000,
  vea = 0,
  vei = 0,
  ved = 0,
  ves = 0,
  vbe = 0,
  n_diag_rec = 1,
  uptake = 0,
  strategy = NULL,
  t_stop = 99
)

Arguments

tt

a numeric vector of times at which the model state is output

gono_params

list of gono params

init_params

A list of starting conditions

dur

scalar or numeric vector with same length as 'gono_params' giving duration of the vaccine (in years)

vea

scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against acquisition (between 0-1)

vei

scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against infectiousness (between 0-1)

ved

scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against duration (between 0-1)

ves

scalar or numeric vector with same length as 'gono_params' giving efficacy of the vaccine against symptoms (between 0-1)

vbe

scalar indicating pc of population vaccinated before entry (between 0-1)

n_diag_rec

integer for the number of diagnosis history substrata

uptake

scalar or numeric vector with same length as 'gono_params' giving pc of population vaccinated as part of strategy @param n_diag_rec integer for the number of diagnosis history substrata

strategy

single character string in "VoD", "VoD(H)", "VoA", "VoA(H)", "VoD(L)+VoA(H)". Defaults to NULL i.e. no vaccination

t_stop

time at which vaccination should stop (years)


mrc-ide/gonovax documentation built on Dec. 15, 2024, 11:02 a.m.