set_protection: generates vector which tells the model which strata are under...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

generates vector which tells the model which strata are under vaccine protection and what the value of protection for that strata is

Description

generates vector which tells the model which strata are under vaccine protection and what the value of protection for that strata is

Usage

set_protection(i_v, idx, n_vax, ve_p, ve, ve_revax)

Arguments

i_v	indices of strata receiving protection through vaccination
idx	list containing indices of all X, P, V, W, R & H strata and n_vax through vaccine-protected strata until that protection has waned through vaccine-protected strata until that protection has waned
n_vax	integer denoting total number of strata
ve_p	scalar 0-1 with degree of partial primary protection of the P(N) strata, can take vea_p, vei_p, ves_p, ved_p
ve	scalar 0-1 with degree of full primary protection of the V(N) strata, can take vea, vei, ves, ved
ve_revax	scalar 0-1 with degree of re-vaccinated protection of the R(N) strata, can take vea_revax, vei_revax, ves_revax, ved_revax

Value

vector of length n_vax with zeros corresponding to the indices of strata with no protection, and the supplied degree of partial, full, and boosted protection corresponding to the indices of strata with partial, full and boosted vaccination status

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.