Resume: A function that prepare the results of a linear model fit
In mssm-msf-2019/BiostatsALL:

This function make a Resume of a microarray linear model fit results after eBayes function

Resume(ebfit, AnnPkg, Decision = NULL, coefs = c(1:ncol(ebfit$coef)),
  adjmeth = "fdr", method = "separate", mcut = 2, fname = "",
  pvalue = 0.05, pPath = 0.05, pGO = 0.05, nPath = 2, ann_ind = TRUE,
  exprset = NULL, which.anncol = c(1:3, 6:7, 9, 11, 12))

`ebfit`	output of eBayes
`Decision`	output of decideTests
`coefs`	vector of character strings that contains the coeficients to be included
`adjmeth`	character string specifying p-value adjustment method. Possible values are "none", "BH", "fdr" (equivalent to "BH"), "BY" and "holm".
`method`	character string specify how probes and contrasts are to be combined in the multiple testing strategy. Choices are "separate", "global", "hierarchical", "nestedF" or any partial string.
`mcut`	numeric value, folchange of cut
`fname`
`pvalue`	critical pvalue
`pPath`	numeric value, ussually number of pathways
`pGO`	numeric value
`nPath`	number of Pathways
`ann_ind`	logical value equal TRUE by default
`exprset`	expression set
`which.anncol`	numeric vector with annotation columns numbers
`ANNPkg`	annotation package