coverageMatrix: Coverage Matrix
In mumichae/DASSIE: Detection of Alternative Transcription Start Sites
View source: R/visual_exploration.R
Description
Generates a matrix with average per-base counts around TSS or PAS of given transcripts
Usage
1
coverageMatrix(cvg_list, regions, strand, feature, window, parallel = F)
Arguments
cvg_list
list of coverage Rles
regions
data.table containing the feature regions, must contain a column "site"
strand
either "+" or "-"
feature
type of feature: "TSS" or "PAS"
window
number of positions upstream and downstream of feature site
mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.
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View source: R/visual_exploration.R
Description
Generates a matrix with average per-base counts around TSS or PAS of given transcripts
Usage
1 | coverageMatrix(cvg_list, regions, strand, feature, window, parallel = F)
|
Arguments
cvg_list |
list of coverage Rles |
regions |
data.table containing the feature regions, must contain a column "site" |
strand |
either "+" or "-" |
feature |
type of feature: "TSS" or "PAS" |
window |
number of positions upstream and downstream of feature site |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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