pasRegions: Polyadenylation site regions
In mumichae/DASSIE: Detection of Alternative Transcription Start Sites
Description
Usage
Arguments
Value
Description
Get regions of specified length around the PAS
Usage
1
pasRegions(exon_dt, window, tx_id = "tx_id")
Arguments
window
number of bp for regions
exons_dt
data.table of GRanges object with columns "tx_id" for each
exon for merging by transcripts. Ranges must be strand-specific.
Value
data.table with coordinates and some metadata on the new regions
exon_id and transcript_id are necessary for joining the features with the rest of the exon annotation.
mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.
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Description Usage Arguments Value
Description
Get regions of specified length around the PAS
Usage
1 | pasRegions(exon_dt, window, tx_id = "tx_id")
|
Arguments
window |
number of bp for regions |
exons_dt |
data.table of GRanges object with columns "tx_id" for each exon for merging by transcripts. Ranges must be strand-specific. |
Value
data.table with coordinates and some metadata on the new regions exon_id and transcript_id are necessary for joining the features with the rest of the exon annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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