tssRegions: Transcription start site regions
In mumichae/DASSIE: Detection of Alternative Transcription Start Sites
Description
Usage
Arguments
Value
Description
Get regions of specified length around the TSS
Usage
1
tssRegions(exon_dt, window, tx_id = "tx_id")
Arguments
window
number of bp for regions
exons_dt
data.table of GRanges object with columns "tx_id" for each
exon for merging by transcripts. Ranges must be strand-specific.
Value
GRanges object with upstream and downstream TSS regions
mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Get regions of specified length around the TSS
Usage
1 | tssRegions(exon_dt, window, tx_id = "tx_id")
|
Arguments
window |
number of bp for regions |
exons_dt |
data.table of GRanges object with columns "tx_id" for each exon for merging by transcripts. Ranges must be strand-specific. |
Value
GRanges object with upstream and downstream TSS regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.